Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnnt2cTroponin T1, skeletal, slow. (290 aa)    
Predicted Functional Partners:
tnni1a
Troponin I type 1a (skeletal, slow).
  
 0.993
tnnc2
Fast skeletal muscle troponin C.
   
 0.987
tnni4b.2
Troponin I4b, tandem duplicate 2.
   
 0.986
tnni1d
Troponin I, skeletal, slow d.
   
 0.986
tnni1b
Troponin I type 1b (skeletal, slow).
  
 0.985
tnni1c
Troponin I, skeletal, slow c.
   
 0.984
tnni2b.1
Troponin I type 2b (skeletal, fast), tandem duplicate 1.
   
 0.981
tnni4a
Troponin I4a.
   
 0.980
tnni2a.1
Troponin I type 2a (skeletal, fast), tandem duplicate 1.
   
 0.970
E9QFE7_DANRE
Si:rp71-17i16.4.
   
 0.960
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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