STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmc2bTransmembrane channel-like protein 2-B; Belongs to the TMC family. (892 aa)    
Predicted Functional Partners:
lhfpl5a
LHFPL tetraspan subfamily member 5a.
      
 0.932
tmie
Transmembrane inner ear.
      
 0.878
myo6b
Myosin VIb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.857
pcdh15a
Protocadherin-related 15a.
    
 
 0.829
lhfpl5b
LHFPL tetraspan subfamily member 5b.
      
 0.811
E9QG92_DANRE
Si:dkey-205h13.2.
    
 
 0.807
lrrc51
Leucine-rich repeat-containing 51.
    
 
 0.718
cdh23
Cadherin-related 23.
    
 
 0.682
cdh23-2
Cadherin-related 23.
    
 
 0.659
cib2
Calcium and integrin-binding family member 2.
    
 
 0.614
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.