STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oatxOrganic anion transporter X. (557 aa)    
Predicted Functional Partners:
slc22a18
Solute carrier family 22 member 18.
   
  
 0.704
txlnbb
Taxilin beta b.
      
 0.664
slco1d1
Solute carrier organic anion transporter family member.
   
  
 0.541
ttbk1b
Tau tubulin kinase 1b.
 
 
 
 0.499
ttbk1a
Tau tubulin kinase 1a.
 
  
 
 0.495
pdzk1
PDZ domain-containing 1.
   
 
 0.489
fuca2
Alpha-L-fucosidase; Alpha-L-fucosidase is responsible for hydrolyzing the alpha- 1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins.
      
 0.474
hivep2a
HIVEP zinc finger 2a.
    
 
 0.465
sv2ca
Synaptic vesicle glycoprotein 2Ca.
  
    0.463
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.