STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ftcdFormimidoyltransferase cyclodeaminase. (550 aa)    
Predicted Functional Partners:
mthfs
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
    
 0.992
mthfd1b
Methylenetetrahydrofolate dehydrogenase (NADP+-dependent) 1b.
  
 
 0.990
mthfd1l
Methylenetetrahydrofolate dehydrogenase (NADP+-dependent) 1-like.
    
 0.990
mthfd2
Mthfd2 protein.
    
 0.987
mthfd2l
Methylenetetrahydrofolate dehydrogenase (NADP+-dependent) 2-like.
    
 0.985
mtfmt
Mitochondrial methionyl-tRNA formyltransferase.
    
 0.978
AMDHD1
Probable imidazolonepropionase.
  
 
 0.977
mthfd1a
C-1-tetrahydrofolate synthase, cytoplasmic isoform X2.
  
 
 0.973
gart
Phosphoribosylglycinamide formyltransferase.
    
 0.961
dhfr
Dihydrofolate reductase.
     
 0.955
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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