Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
yipf4Protein YIPF4; Involved in the maintenance of the Golgi structure. Belongs to the YIP1 family. (237 aa)    
Predicted Functional Partners:
yipf3
Protein YIPF3; Involved in the maintenance of the Golgi structure. May play a role in hematopoiesis (By similarity); Belongs to the YIP1 family.
   
 
 0.996
yipf1
Protein YIPF.
   
 
 0.978
yipf2
Protein YIPF.
   
 
 0.963
yif1a
Protein YIF1A; Possible role in transport between endoplasmic reticulum and Golgi; Belongs to the YIF1 family.
   
 
 0.907
yif1b
Protein YIF1B.
   
 
 0.855
ppig
Peptidylprolyl isomerase G (cyclophilin G).
   
  
 0.775
akirin1
Zgc:64050.
   
  
 0.745
tmppe
Transmembrane protein with metallophosphoesterase domain; Belongs to the metallophosphoesterase superfamily. LOC643853 family.
      
 0.722
uhmk1
U2AF homology motif (UHM) kinase 1.
      
 0.720
cd8a
CD8 antigen, alpha polypeptide.
      
 0.715
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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