Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zgc:92242Zgc:92242. (280 aa)    
Predicted Functional Partners:
ppp1r7
Protein phosphatase 1 regulatory subunit 7; Regulatory subunit of protein phosphatase 1; Belongs to the SDS22 family.
    
   0.750
ppp1cb
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.652
ppp1cbl
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
   0.652
shq1
Protein SHQ1 homolog; Required for the quantitative accumulation of H/ACA ribonucleoproteins (RNPs); Belongs to the SHQ1 family.
   
  
 0.457
tmem260
Transmembrane protein 260.
      
 0.443
si:dkey-13p1.3
Si:dkey-13p1.3.
      
 0.443
mllt10
MLLT10 histone lysine methyltransferase DOT1L cofactor.
   
  
 0.429
dbnla
Drebrin-like a.
    
 
 0.425
dbnlb
Drebrin-like b.
    
 
 0.425
dbn1
Drebrin 1.
    
 
 0.425
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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