STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pompProteasome maturation protein. (142 aa)    
Predicted Functional Partners:
psma4
Proteasome subunit alpha type.
   
 
 0.999
psma3
Proteasome subunit alpha type.
   
 
 0.998
psma1
Proteasome subunit alpha type.
   
 
 0.998
psmb1
Proteasome subunit beta.
   
 
 0.997
psmb3
Proteasome subunit beta.
   
 
 0.997
psmb4
Proteasome subunit beta; Belongs to the peptidase T1B family.
   
 
 0.997
psmb2
Proteasome subunit beta.
   
 
 0.996
psma8
Proteasome subunit alpha type.
   
 
 0.989
psmb9a
Proteasome subunit beta.
   
 
 0.983
psmb6
Proteasome subunit beta.
   
 
 0.980
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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