Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lbx1aNovel protein similar to zebrafish lady bird-like homeobox 1 Drosophila homolog (Lbx1h). (269 aa)    
Predicted Functional Partners:
or101-1
Odorant receptor, family B, subfamily 101, member 1.
      
 0.740
kazald3
Kazal-type serine peptidase inhibitor domain 3.
      
 0.594
kazald2
Kazal-type serine peptidase inhibitor domain 2.
      
 0.590
fgf18b
Fibroblast growth factor 18b; Belongs to the heparin-binding growth factors family.
      
 0.555
fgf17
Fibroblast growth factor 17; Involved in dorsal-ventral embryonic patterning, by promoting expression of bone morphogenetic protein (BMP) antagonists such as chd. Also involved in anterior-posterior neural patterning and in mesoderm induction; Belongs to the heparin-binding growth factors family.
      
 0.547
fgf8b
Fibroblast growth factor 8b; May act as signaling molecule during development of the midbrain-hindbrain boundary (MHB) organizer, and be involved in patterning of the nervous system.
      
 0.487
npm3
Nucleophosmin/nucleoplasmin, 3.
      
 0.446
ap1ar
Adaptor-related protein complex 1-associated regulatory protein.
      
 0.417
nudt6
Nudix (nucleoside diphosphate-linked moiety X)-type motif 6.
      
 0.417
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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