STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lbx1aNovel protein similar to zebrafish lady bird-like homeobox 1 Drosophila homolog (Lbx1h). (269 aa)    
Predicted Functional Partners:
or101-1
Odorant receptor, family B, subfamily 101, member 1.
      
 0.743
kazald2
Kazal-type serine peptidase inhibitor domain 2.
      
 0.582
kazald3
Kazal-type serine peptidase inhibitor domain 3.
      
 0.562
fgf17
Fibroblast growth factor 17; Involved in dorsal-ventral embryonic patterning, by promoting expression of bone morphogenetic protein (BMP) antagonists such as chd. Also involved in anterior-posterior neural patterning and in mesoderm induction; Belongs to the heparin-binding growth factors family.
   
  
 0.540
fgf18b
Fibroblast growth factor 18b; Belongs to the heparin-binding growth factors family.
   
  
 0.498
fgf8b
Fibroblast growth factor 8b; May act as signaling molecule during development of the midbrain-hindbrain boundary (MHB) organizer, and be involved in patterning of the nervous system.
   
  
 0.497
npm3
Nucleophosmin/nucleoplasmin, 3.
      
 0.452
npm2b
Nucleophosmin/nucleoplasmin, 2b.
   
  
 0.423
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (32%) [HD]