STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syt4Synaptotagmin IV. (439 aa)    
Predicted Functional Partners:
adam23a
ADAM metallopeptidase domain 23a.
   
  
 0.733
stx1b
Syntaxin 1B; Belongs to the syntaxin family.
   
 
 0.701
dcakd
Dephospho-CoA kinase domain-containing protein; Belongs to the CoaE family.
      
 0.666
cdk5r2a
Cyclin-dependent kinase 5 activator.
   
  
 0.660
ptprna
Protein tyrosine phosphatase receptor type Na.
   
  
 0.653
snap25b
Synaptosomal-associated protein 25-B; May play an important role in the synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane fusion; Belongs to the SNAP-25 family.
   
 
 0.626
otofb
Otoferlin b.
   
  
 0.613
rab3c
RAB3C, member RAS oncogene family.
   
 
 0.603
syt1a
Synaptotagmin Ia.
  
 
0.602
syn1
Synapsin I.
   
 
 0.601
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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