STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F1Q4X3_DANRESi:dkey-222n6.2; Belongs to the intermediate filament family. (382 aa)    
Predicted Functional Partners:
ube2v1
Ubiquitin-conjugating enzyme E2 variant 1.
   
 
 0.810
krt222
Keratin 222; Belongs to the intermediate filament family.
    
 
 0.747
krt98
Keratin 98; Belongs to the intermediate filament family.
  
 
0.693
krt99
Novel keratin protein (Zgc:110712); Belongs to the intermediate filament family.
  
 
0.675
wu:fk65c09
Wu:fk65c09; Belongs to the intermediate filament family.
  
 
0.671
krt17
Si:dkeyp-113d7.7; Belongs to the intermediate filament family.
  
 
0.665
E7F6W3_DANRE
Si:ch211-156l18.7; Belongs to the intermediate filament family.
    
0.665
krt96
Keratin 96; Belongs to the intermediate filament family.
  
 
0.663
krt93
Keratin 93; Belongs to the intermediate filament family.
  
 
0.657
cyt1l
Type I cytokeratin, enveloping layer,-like; Belongs to the intermediate filament family.
  
 
0.653
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.