STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrp36Ribosomal RNA-processing 36. (320 aa)    
Predicted Functional Partners:
abt1
Activator of basal transcription 1.
   
 
 0.996
utp3
UTP3 small subunit processome component.
   
 
 0.983
rrp9
Ribosomal RNA-processing 9, U3 small nucleolar RNA-binding protein.
   
 
 0.983
utp25
Digestive organ expansion factor; Regulates the p53 pathway to control the expansion growth of digestive organs. Required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas. May not play a major role during the early stage of endodermal organogenesis.
   
 
 0.981
bysl
Bystin-like.
   
 
 0.980
utp6
UTP6 small subunit processome component.
   
 0.978
ddx10
RNA helicase.
   
 
 0.975
utp18
UTP18 small subunit processome component.
   
 0.974
nom1
Nucleolar protein with MIF4G domain 1.
   
 
 0.969
krr1
KRR1 small subunit processome component homolog.
   
 
 0.953
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.