STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vrk1Serine/threonine-protein kinase VRK1; Serine/threonine kinase involved in Golgi disassembly during the cell cycle; Belongs to the protein kinase superfamily. CK1 Ser/Thr protein kinase family. VRK subfamily. (425 aa)    
Predicted Functional Partners:
ankle2
Ankyrin repeat and LEM domain-containing 2.
   
 0.922
banf1
Barrier-to-autointegration factor; Plays fundamental roles in nuclear assembly, chromatin organization, gene expression and gonad development. May potently compress chromatin structure and be involved in membrane recruitment and chromatin decondensation during nuclear assembly. Contains 2 non- specific dsDNA-binding sites which may promote DNA cross-bridging (By similarity).
   
 
 0.794
Q1L957_DANRE
Si:dkey-211g8.4.
    
 
 0.780
tsen2
TSEN2 tRNA-splicing endonuclease subunit.
      
 0.662
ltv1
Protein LTV1 homolog; Belongs to the LTV1 family.
    
 
 0.638
exosc3
Exosome component 3.
      
 0.593
wu:fc33b09
Exosome component 3.
      
 0.593
hrc-2
Histidine-rich calcium-binding protein.
   
 
 0.586
tsen15
Similar to chromosome 1 open reading frame 19.
      
 0.581
bysl
Bystin-like.
    
 
 0.571
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.