STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lnx2aLigand of numb-protein X 2a. (737 aa)    
Predicted Functional Partners:
numb
NUMB endocytic adaptor protein.
   
 
 0.819
numbl
NUMB-like endocytic adaptor protein.
   
 
 0.816
klhl11
Kelch-like family member 11.
    
 
 0.761
pdzd4
PDZ domain-containing protein.
      
 0.743
igsf5a
Immunoglobulin superfamily, member 5a.
    
 
 0.677
tmed4
Transmembrane p24-trafficking protein 4.
   
 
 0.657
dharma
Dharma.
      
 0.628
erc2
ELKS/RAB6-interacting/CAST family member 2.
    
 
 0.616
ppfia1
PTPRF-interacting protein alpha 1.
    
 
 0.607
tomm34
Translocase of outer mitochondrial membrane 34.
    
 
 0.606
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.