Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sccpdha.1Saccharopine dehydrogenase a, tandem duplicate 1. (427 aa)    
Predicted Functional Partners:
foxred1
FAD-dependent oxidoreductase domain-containing 1.
      
 0.782
arl4ab
ADP-ribosylation factor-like 4, like.
    
 
 0.737
ublcp1
Ubiquitin-like domain-containing CTD phosphatase 1; Dephosphorylates 26S nuclear proteasomes, thereby decreasing their proteolytic activity. The dephosphorylation may prevent assembly of the core and regulatory particles (CP and RP) into mature 26S proteasome (By similarity).
      
 0.736
UBLCP1
Ubiquitin like domain containing CTD phosphatase 1.
      
 0.736
f13a1a.1
Coagulation factor XIII, A1 polypeptide a, tandem duplicate 1.
   
  
 0.723
st6galnac3
N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7C); Belongs to the glycosyltransferase 29 family.
      
 0.720
dgcr2
DiGeorge syndrome critical region gene 2.
      
 0.685
aacs
Acetoacetyl-CoA synthetase; Activates acetoacetate to acetoacetyl-CoA; Belongs to the ATP-dependent AMP-binding enzyme family.
      
 0.671
ptgr1
Prostaglandin reductase 1.
   
  
 0.669
st6galnac4
Alpha-2,6-sialyltransferase; Belongs to the glycosyltransferase 29 family.
      
 0.667
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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