STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trim55aTripartite motif-containing 55a. (443 aa)    
Predicted Functional Partners:
FADS6
Fatty acid desaturase 6.
    
 
 0.861
srfb
Serum response factor b.
    
 
 0.589
klhl41b
Kelch-like protein 41b; Involved in skeletal muscle development and maintenance.
   
 
 0.584
smyd1b
SET and MYND domain-containing 1b.
   
 
 0.581
trim33l
Tripartite motif-containing 33,-like.
      
 0.568
adarb1b
Adenosine deaminase RNA-specific B1b.
      
 0.568
trim110
Tripartite motif-containing 110.
      
 0.568
ccl35.1
Chemokine (C-C motif) ligand 35, duplicate 1.
      
 0.568
trim105
Tripartite motif-containing 105.
      
 0.567
cdhr2
Uncharacterized protein.
      
 0.562
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.