Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gramd4bGRAM domain-containing 4b. (612 aa)    
Predicted Functional Partners:
nkrf
NFKB-repressing factor.
    
 
 0.606
ccnj
Cyclin J; Belongs to the cyclin family.
      
 0.531
znf408
Zinc finger protein 408.
    
 
 0.463
acot13
Acyl-CoA thioesterase 13.
      
 0.446
akap7
A kinase (PRKA) anchor protein 7.
      
 0.444
spata4
Spermatogenesis-associated 4.
    
 
 0.433
crygn1
Gamma-crystallin N-A; Crystallins are the dominant structural components of the vertebrate eye lens.
  
 
  0.415
cdhr1a
Cadherin-related family member 1; Potential calcium-dependent cell-adhesion protein.
  
     0.413
CDHR1
Cadherin related family member 1.
  
     0.404
ENSDARP00000139721
Si:dkeyp-97a10.2.
    
  0.403
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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