STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbck1RanBP-type and C3HC4-type zinc finger-containing protein 1. (515 aa)    
Predicted Functional Partners:
sharpin
SHANK-associated RH domain-interacting protein.
   
0.993
LOC100334178
Uncharacterized protein.
   
 0.983
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
   
 0.943
ripk1l
Receptor (TNFRSF)-interacting serine-threonine kinase 1,-like.
    
 0.932
traf2b
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.923
traf2a
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.917
birc2
Baculoviral IAP repeat-containing 2.
    
 0.913
traf5
Tnf receptor-associated factor 5.
   
 0.913
xiap
X-linked inhibitor of apoptosis.
    
 0.909
ripk2
Receptor-interacting serine-threonine kinase 2.
   
  0.906
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.