STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nalcnSodium leak channel, non-selective. (1742 aa)    
Predicted Functional Partners:
unc80
Unc-80 homolog (C. elegans).
   
 
 0.963
fam155b
Transmembrane protein FAM155B.
   
 
 0.874
fam155a
Family with sequence similarity 155 member A.
   
 
 0.869
scn2b
Voltage-gated sodium channel beta 2 subunit splice variant D.
   
 
 0.684
zgc:66101
Serine/threonine-protein kinase SIK3 homolog.
   
  
 0.636
kcnc2
Potassium voltage-gated channel, Shaw-related subfamily, member 2; Belongs to the potassium channel family.
   
 
 0.626
fbxl4
F-box and leucine-rich repeat protein 4.
   
  
 0.616
scn1ba
Voltage-gated sodium channel beta 1 subunit splice variant D.
   
 
 0.574
nts
Neurotensin.
   
  
 0.571
LOC100332538
Endothelin-converting enzyme-like 1.
   
  
 0.568
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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