Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
E7FAQ3_DANRESi:ch211-125e6.5. (151 aa)    
Predicted Functional Partners:
tmigd1
Transmembrane and immunoglobulin domain-containing 1.
      
 0.720
trmt1
tRNA methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
      
 0.661
dusp27
Inactive dual specificity phosphatase 27; Required for myofiber maturation.
      
 0.661
Q1LXF9_DANRE
Si:dkey-102c8.3.
    
 
 0.570
cfhl1
Complement factor H-like 1.
    
 0.568
dusp16
Dual-specificity phosphatase 16.
      
 0.564
E7FBQ2_DANRE
Si:ch211-281l24.3.
      
 0.561
trim35-27
Tripartite motif-containing 35-27.
      
 0.559
mmp13b
Matrix metallopeptidase 13b.
   
 
 0.494
aopep
Aminopeptidase O (putative).
      
 0.484
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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