Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ENSDARP00000129086 | trim9 | ENSDARP00000129086 | ENSDARP00000048738 | Neogenin 1b. | Tripartite motif-containing 9. | 0.509 |
LOC100332721 | trim9 | ENSDARP00000099985 | ENSDARP00000048738 | Neogenin 1b. | Tripartite motif-containing 9. | 0.509 |
atp5l | trim9 | ENSDARP00000007716 | ENSDARP00000048738 | ATP synthase subunit; Mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F1 - containing the extramembraneous catalytic core, and F0 - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proto [...] | Tripartite motif-containing 9. | 0.565 |
fbxo44 | rnf6 | ENSDARP00000122089 | ENSDARP00000099863 | F-box protein 44. | Ring finger protein (C3H2C3 type) 6. | 0.689 |
fbxo44 | trim9 | ENSDARP00000122089 | ENSDARP00000048738 | F-box protein 44. | Tripartite motif-containing 9. | 0.676 |
itln3 | pglyrp2 | ENSDARP00000014852 | ENSDARP00000124361 | Intelectin 3. | Peptidoglycan recognition protein 2. | 0.678 |
itln3 | trim9 | ENSDARP00000014852 | ENSDARP00000048738 | Intelectin 3. | Tripartite motif-containing 9. | 0.567 |
nop2 | trim9 | ENSDARP00000102247 | ENSDARP00000048738 | NOP2 nucleolar protein homolog (yeast); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Tripartite motif-containing 9. | 0.513 |
pglyrp2 | itln3 | ENSDARP00000124361 | ENSDARP00000014852 | Peptidoglycan recognition protein 2. | Intelectin 3. | 0.678 |
pglyrp2 | trim9 | ENSDARP00000124361 | ENSDARP00000048738 | Peptidoglycan recognition protein 2. | Tripartite motif-containing 9. | 0.544 |
rnf6 | fbxo44 | ENSDARP00000099863 | ENSDARP00000122089 | Ring finger protein (C3H2C3 type) 6. | F-box protein 44. | 0.689 |
rnf6 | trim9 | ENSDARP00000099863 | ENSDARP00000048738 | Ring finger protein (C3H2C3 type) 6. | Tripartite motif-containing 9. | 0.657 |
trim44 | trim9 | ENSDARP00000067930 | ENSDARP00000048738 | Tripartite motif-containing 44. | Tripartite motif-containing 9. | 0.694 |
trim9 | ENSDARP00000129086 | ENSDARP00000048738 | ENSDARP00000129086 | Tripartite motif-containing 9. | Neogenin 1b. | 0.509 |
trim9 | LOC100332721 | ENSDARP00000048738 | ENSDARP00000099985 | Tripartite motif-containing 9. | Neogenin 1b. | 0.509 |
trim9 | atp5l | ENSDARP00000048738 | ENSDARP00000007716 | Tripartite motif-containing 9. | ATP synthase subunit; Mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F1 - containing the extramembraneous catalytic core, and F0 - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F1 is coupled via a rotary mechanism of the central stalk subunits to proto [...] | 0.565 |
trim9 | fbxo44 | ENSDARP00000048738 | ENSDARP00000122089 | Tripartite motif-containing 9. | F-box protein 44. | 0.676 |
trim9 | itln3 | ENSDARP00000048738 | ENSDARP00000014852 | Tripartite motif-containing 9. | Intelectin 3. | 0.567 |
trim9 | nop2 | ENSDARP00000048738 | ENSDARP00000102247 | Tripartite motif-containing 9. | NOP2 nucleolar protein homolog (yeast); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.513 |
trim9 | pglyrp2 | ENSDARP00000048738 | ENSDARP00000124361 | Tripartite motif-containing 9. | Peptidoglycan recognition protein 2. | 0.544 |
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