STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
matn1Matrilin 1. (489 aa)    
Predicted Functional Partners:
fgfbp2b
Fibroblast growth factor-binding protein 2b.
   
  
 0.859
and2
Zgc:175106 protein.
   
 
 0.762
mia
Similar to cartilage-derived retinoic acid-sensitive protein.
   
  
 0.761
fgfbp2a
Fibroblast growth factor-binding protein 2a.
   
  
 0.715
ENSDARP00000130960
Si:dkey-65b13.9.
   
 
 0.691
lum
Lumican.
   
 
 0.683
rbp2b
Cellular retinol-binding protein type II; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family.
   
  
 0.652
cpn1
Carboxypeptidase N, polypeptide 1.
   
  
 0.647
atf5b
Activating transcription factor 5b.
      
 0.645
cpn1-2
Carboxypeptidase N, polypeptide 1.
      
 0.644
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.