Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
col11a1bCollagen, type XI, alpha 1b. (1815 aa)    
Predicted Functional Partners:
col6a1
Collagen, type VI, alpha 1.
  
0.717
col9a2
Procollagen, type IX, alpha 2.
  
 
0.694
mybphb
Myosin-binding protein Hb.
    
 0.678
mybpha
Myosin-binding protein Ha.
   
  
 0.668
col1a2
Collagen, type I, alpha 2.
  
  
0.661
p3h3
Prolyl 3-hydroxylase 3.
    
 0.656
col1a1b
Collagen, type I, alpha 1b.
  
 
0.629
myorg
Myogenesis-regulating glycosidase (putative); Belongs to the glycosyl hydrolase 31 family.
    
 
 0.614
col1a1a
Collagen, type I, alpha 1a.
  
 
0.607
col5a2b
Collagen, type V, alpha 2b.
  
  
 
0.587
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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