STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grifinGrifin; Binds lactose. (139 aa)    
Predicted Functional Partners:
Plekhg3
Si:ch73-212j7.3.
      
 0.937
lrit2
Leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 2.
      
 0.838
wdr17
WD repeat domain 17.
    
 
 0.838
ankrd33aa
Ankyrin repeat domain 33Aa.
    
 
 0.834
ankrd33ab
Ankyrin repeat domain 33Ab.
    
 
 0.811
zgc:163061
Zgc:163061.
      
 0.804
E7F5A4_DANRE
Si:dkey-261m9.12.
      
 0.804
E7FAK0_DANRE
Si:ch211-113a14.24.
      
 0.804
E7F8J2_DANRE
Si:dkey-108k21.10.
      
 0.804
E9QFU6_DANRE
Si:ch73-36p18.1.
      
 0.804
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.