STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dhrs11bDehydrogenase/reductase (SDR family) member 11b; Belongs to the short-chain dehydrogenases/reductases (SDR) family (255 aa)    
Predicted Functional Partners:
hsd17b3
Hydroxysteroid (17-beta) dehydrogenase 3; Belongs to the short-chain dehydrogenases/reductases (SDR) family
  
 
 0.514
hsd17b2
Hydroxysteroid (17-beta) dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family
   
  
 0.492
mrm1
Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
  
  
 0.488
tada2a
Transcriptional adaptor 2A
      
 0.475
znhit3
Zinc finger, HIT-type containing 3
      
 0.470
ggnbp2
Gametogenetin binding protein 2
      
 0.450
stx6
Stx6 protein; Syntaxin 6; Belongs to the syntaxin family
   
   0.446
rdh1
Retinol dehydrogenase 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family
  
  
 0.435
OXSM
3-oxoacyl-ACP synthase, mitochondrial; Belongs to the beta-ketoacyl-ACP synthases family
  
 
 0.432
fsip1
Fibrous sheath interacting protein 1; Belongs to the FSIP1 family
      
 0.429
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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