Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cbln9Cerebellin 9. (183 aa)    
Predicted Functional Partners:
E7F3G8_DANRE
Si:ch211-113j14.1; Belongs to the cytochrome P450 family.
    
 0.787
bcap29
B cell receptor-associated protein 29.
   
  
 0.786
arsib
Arylsulfatase family, member Ib.
      
 0.780
F1QPY9_DANRE
Si:dkeyp-51b7.3.
     
 0.760
prss16
Serine protease 16.
      
 0.718
hspa12a.2
Si:ch211-250m6.2.
   
 0.700
fibcd1
Fibrinogen C domain-containing 1.
     
 0.672
oit3
Oncoprotein-induced transcript 3.
    
 0.671
birc7
Baculoviral IAP repeat-containing 7.
    
 
 0.614
ptprsa
Protein tyrosine phosphatase receptor type Sa.
      
 0.596
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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