STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbln9Cerebellin 9. (183 aa)    
Predicted Functional Partners:
E7F3G8_DANRE
Si:ch211-113j14.1; Belongs to the cytochrome P450 family.
    
 
 0.834
bcap29
B cell receptor-associated protein 29.
   
  
 0.811
F1QPY9_DANRE
Si:dkeyp-51b7.3.
      
 0.803
hspa12a.2
Si:ch211-250m6.2.
   
 
 0.752
prss16
Serine protease 16.
      
 0.745
fibcd1
Fibrinogen C domain-containing 1.
      
 0.740
arsib
Arylsulfatase family, member Ib.
      
 0.717
oit3
Oncoprotein-induced transcript 3.
    
 
 0.683
I3IS45_DANRE
Si:dkey-204a24.11.
    
 
 0.674
cyp27c1
Cytochrome P450 27C1; Efficiently catalyzes the conversion of all-trans retinol (also called vitamin A1, the precursor of 11-cis retinal) to 3,4- didehydroretinol (also called vitamin A2, the precursor of 11-cis 3,4- didehydroretinal). Also acts on all-trans retinal and all-trans retinoic acid. The replacement of 11-cis retinal chromophore in photopigments with 11-cis 3,4-didehydroretinal enhances sensitivity to long-wavelength light. This may improve vision in fresh water which is often turbid; Belongs to the cytochrome P450 family.
    
 
 0.652
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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