STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crim1Cysteine-rich motor neuron 1 protein; May play a role in CNS development by interacting with growth factors implicated in motor neuron differentiation and survival. (1027 aa)    
Predicted Functional Partners:
faub
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.742
faua
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.742
edil3a
EGF-like repeats and discoidin I-like domains 3a.
    
 
 0.645
E7F813_DANRE
Si:ch211-237i5.4.
    
 
 0.567
si:dkey-43k4.5
Si:dkey-43k4.5; Belongs to the potassium channel family.
   
 
 0.558
grem2b
Gremlin.
      
 0.540
gle1
Nucleoporin GLE1; Required for the export of mRNAs containing poly(A) tails from the nucleus into the cytoplasm. May be involved in the terminal step of the mRNA transport through the nuclear pore complex (NPC) (By similarity).
   
 
 0.489
rraga
Ras-related GTP-binding A.
   
 
 0.484
lxn
Latexin.
      
 0.481
rab40c
RAB40c, member RAS oncogene family.
      
 0.480
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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