rrnad1 protein (Danio rerio) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
asmtl	comtd1	ENSDARP00000007743	ENSDARP00000115880	Acetylserotonin O-methyltransferase-like.	Catechol-O-methyltransferase domain-containing 1.	0.535
asmtl	eef1akmt2	ENSDARP00000007743	ENSDARP00000148805	Acetylserotonin O-methyltransferase-like.	EEF1A lysine methyltransferase 2; Protein-lysine methyltransferase that selectively catalyzes the trimethylation of EEF1A at 'Lys-318'; Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.	0.562
asmtl	mettl9	ENSDARP00000007743	ENSDARP00000078511	Acetylserotonin O-methyltransferase-like.	Methyltransferase-like 9.	0.461
asmtl	mtrf1l	ENSDARP00000007743	ENSDARP00000131149	Acetylserotonin O-methyltransferase-like.	Mitochondrial translational release factor 1-like.	0.516
asmtl	rrnad1	ENSDARP00000007743	ENSDARP00000050534	Acetylserotonin O-methyltransferase-like.	Ribosomal RNA adenine dimethylase domain-containing 1.	0.628
asmtl	rsad1	ENSDARP00000007743	ENSDARP00000101526	Acetylserotonin O-methyltransferase-like.	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity (By similarity). Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl- L-methionine (By similarity).	0.516
castor2	mios	ENSDARP00000005214	ENSDARP00000132748	Cytosolic arginine sensor for mTORC1 subunit 2.	GATOR complex protein MIOS; As a component of the GATOR complex may function in the amino acid-sensing branch of the TORC1 signaling pathway.	0.993
castor2	rrnad1	ENSDARP00000005214	ENSDARP00000050534	Cytosolic arginine sensor for mTORC1 subunit 2.	Ribosomal RNA adenine dimethylase domain-containing 1.	0.679
castor2	wdr24	ENSDARP00000005214	ENSDARP00000008451	Cytosolic arginine sensor for mTORC1 subunit 2.	GATOR complex protein WDR24; As a component of the GATOR complex may function in the amino acid-sensing branch of the TORC1 signaling pathway.	0.985
castor2	wdr59	ENSDARP00000005214	ENSDARP00000144192	Cytosolic arginine sensor for mTORC1 subunit 2.	WD repeat domain 59.	0.987
comtd1	asmtl	ENSDARP00000115880	ENSDARP00000007743	Catechol-O-methyltransferase domain-containing 1.	Acetylserotonin O-methyltransferase-like.	0.535
comtd1	mettl9	ENSDARP00000115880	ENSDARP00000078511	Catechol-O-methyltransferase domain-containing 1.	Methyltransferase-like 9.	0.415
comtd1	mtrf1l	ENSDARP00000115880	ENSDARP00000131149	Catechol-O-methyltransferase domain-containing 1.	Mitochondrial translational release factor 1-like.	0.545
comtd1	rrnad1	ENSDARP00000115880	ENSDARP00000050534	Catechol-O-methyltransferase domain-containing 1.	Ribosomal RNA adenine dimethylase domain-containing 1.	0.671
comtd1	rsad1	ENSDARP00000115880	ENSDARP00000101526	Catechol-O-methyltransferase domain-containing 1.	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity (By similarity). Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl- L-methionine (By similarity).	0.611
eef1akmt2	asmtl	ENSDARP00000148805	ENSDARP00000007743	EEF1A lysine methyltransferase 2; Protein-lysine methyltransferase that selectively catalyzes the trimethylation of EEF1A at 'Lys-318'; Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.	Acetylserotonin O-methyltransferase-like.	0.562
eef1akmt2	mettl9	ENSDARP00000148805	ENSDARP00000078511	EEF1A lysine methyltransferase 2; Protein-lysine methyltransferase that selectively catalyzes the trimethylation of EEF1A at 'Lys-318'; Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.	Methyltransferase-like 9.	0.621
eef1akmt2	mtrf1l	ENSDARP00000148805	ENSDARP00000131149	EEF1A lysine methyltransferase 2; Protein-lysine methyltransferase that selectively catalyzes the trimethylation of EEF1A at 'Lys-318'; Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.	Mitochondrial translational release factor 1-like.	0.479
eef1akmt2	rrnad1	ENSDARP00000148805	ENSDARP00000050534	EEF1A lysine methyltransferase 2; Protein-lysine methyltransferase that selectively catalyzes the trimethylation of EEF1A at 'Lys-318'; Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.	Ribosomal RNA adenine dimethylase domain-containing 1.	0.695
eef1akmt2	rsad1	ENSDARP00000148805	ENSDARP00000101526	EEF1A lysine methyltransferase 2; Protein-lysine methyltransferase that selectively catalyzes the trimethylation of EEF1A at 'Lys-318'; Belongs to the class I-like SAM-binding methyltransferase superfamily. EFM4 family.	Radical S-adenosyl methionine domain-containing protein 1, mitochondrial; May be a heme chaperone, appears to bind heme. Homologous bacterial proteins do not have oxygen-independent coproporphyrinogen- III oxidase activity (By similarity). Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl- L-methionine (By similarity).	0.656

page 1 of 3

Server load: low (12%) [HD]

Share

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About