STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tlcd5bTLC domain-containing protein 5. (242 aa)    
Predicted Functional Partners:
rbms3
RNA-binding motif, single stranded-interacting protein.
      
 0.865
loxl1
Lysyl oxidase-like 1.
   
  
 0.755
cacna1aa
Calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, a.
   
  
 0.672
sema6a
Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A.
      
 0.593
or111-10
Odorant receptor, family D, subfamily 111, member 10.
      
 0.560
pomp
Proteasome maturation protein.
      
 0.474
islr2
Immunoglobulin superfamily-containing leucine-rich repeat 2.
   
  
 0.438
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.