Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
snrnp27U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein; May play a role in mRNA splicing. (158 aa)    
Predicted Functional Partners:
cherp
Calcium homeostasis endoplasmic reticulum protein.
    
   0.930
usp39
Ubiquitin-specific peptidase 39.
   
 
 0.895
CIR1
Si:ch73-167c12.2.
   
  
 0.744
srpk1a
SRSF protein kinase 1a.
    
 
 0.731
snrpa
Small nuclear ribonucleoprotein polypeptide A.
   
  
 0.714
pfdn4
Prefoldin subunit 4; Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins; Belongs to the prefoldin subunit beta family.
   
  
 0.711
atp5md
ATP synthase membrane subunit DAPIT.
   
  
 0.692
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation-associated.
   
 
 0.688
fkbp7
Peptidylprolyl isomerase.
   
  
 0.673
prpf39
Pre-mRNA-processing factor 39; Involved in pre-mRNA splicing; Belongs to the PRP39 family.
      
 0.662
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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