STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sat1a.1Spermidine/spermine N1-acetyltransferase 1a, duplicate 1. (171 aa)    
Predicted Functional Partners:
odc1
Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
 0.936
agmat
Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.
  
 
 0.918
mao
Amine oxidase [flavin-containing]; Catalyzes the oxidative deamination of biogenic and xenobiotic amines and has important functions in the metabolism of neuroactive and vasoactive amines in the central nervous system and peripheral tissues. Oxidizes both 5-hydroxytryptamine (5-HT) and beta- phenylethylamine (PEA); Belongs to the flavin monoamine oxidase family.
   
 
 0.911
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
     
 0.911
ENSDARP00000132681
Amine oxidase.
     
 0.905
aoc1
Amine oxidase.
   
 
 0.902
acot9.1
Acyl-CoA thioesterase 9, tandem duplicate 1.
      
 0.860
prdx4
Peroxiredoxin 4.
   
  
 0.672
rerea
Arginine-glutamic acid dipeptide (RE) repeats a.
      
 0.669
spp1
Secreted phosphoprotein 1.
   
 
 0.646
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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