STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grn1Zgc:136318 protein. (147 aa)    
Predicted Functional Partners:
LOC110437757
Si:ch211-255f4.7.
   
  
 0.806
arhgap17b
Rho GTPase-activating protein 17b.
      
 0.669
slc43a3b
Solute carrier family 43 member 3b.
   
 
 0.633
ctsc
Cathepsin C; Belongs to the peptidase C1 family.
   
 
 0.624
slc7a7
Solute carrier family 7 member 7.
   
 
 0.574
hyal6
Hyaluronidase.
      
 0.566
TCERG1L
Transcription elongation regulator 1 like.
      
 0.564
cs
Citrate synthase, mitochondrial.
   
   0.555
tnfaip8l2b
Tumor necrosis factor, alpha-induced protein 8-like protein 2 B; Acts as a negative regulator of innate and adaptive immunity by maintaining immune homeostasis. Negative regulator of Toll-like receptor and T-cell receptor function. Prevents hyperresponsiveness of the immune system and maintains immune homeostasis. Inhibits jun/ap1 and NF-kappa-B activation. Promotes Fas-induced apoptosis (By similarity); Belongs to the TNFAIP8 family. TNFAIP8L2 subfamily.
   
  
 0.553
plaua
Urokinase-type plasminogen activator a; Belongs to the peptidase S1 family.
    
 
 0.552
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.