STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crabp1bCellular retinoic acid-binding protein type I; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (137 aa)    
Predicted Functional Partners:
dhrs3b
Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.693
rdh14a
Retinol dehydrogenase 14a.
   
  
 0.667
A2BGW2_DANRE
Si:dkey-174n20.1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.667
rdh14b
Retinol dehydrogenase 14b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  
 0.652
tmem255a
Transmembrane protein 255A.
      
 0.580
coro6
Coronin; Belongs to the WD repeat coronin family.
      
 0.543
mcama
Melanoma cell adhesion molecule a.
      
 0.541
gnb3a
Novel protein similar to guanine nucleotide binding protein (G protein) beta polypeptide family.
   
  
 0.457
hat1
Histone acetyltransferase type B catalytic subunit; Acetylates soluble but not nucleosomal histone H4 at 'Lys-5' (H4K5ac) and 'Lys-12' (H4K12ac) and, to a lesser extent, acetylates histone H2A at 'Lys-5' (H2AK5ac). Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG.
      
 0.452
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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