Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ccdc96Similar to coiled-coil domain containing 96. (479 aa)    
Predicted Functional Partners:
efcab1
EF-hand calcium-binding domain 1.
    
 
 0.956
iqub
IQ motif and ubiquitin domain-containing.
   
 
 0.955
armc3
Armadillo repeat-containing 3.
   
 
 0.944
ccdc113
Coiled-coil domain-containing protein 113; May be involved in primary cilium formation.
   
 
 0.937
CI116_DANRE
UPF0691 protein C9orf116 homolog; Belongs to the UPF0691 family.
   
 
 0.935
C19H5orf49
Si:dkeyp-46h3.1.
    
 
 0.903
cfap20
Cilia- and flagella-associated protein 20; Cilium- and flagellum-specific protein that plays a role in axonemal structure organization and motility. Involved in the regulation of the size and morphology of cilia. Required for axonemal microtubules polyglutamylation (By similarity). Plays a role in cilia stability.
    
 
 0.900
ccdc135
Coiled-coil domain-containing 135.
    
 
 0.897
ccdc125
Coiled-coil domain-containing protein 125.
      
 0.893
C14H4orf47
UPF0602 protein C4orf47 homolog.
    
 
 0.892
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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