STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpn2bTyrosine-protein phosphatase non-receptor type. (393 aa)    
Predicted Functional Partners:
stat1a
Signal transducer and activator of transcription.
   
 0.834
ptpn13
Protein tyrosine phosphatase non-receptor type 13.
 
  
   0.751
frmd3
FERM domain-containing 3.
 
    
 0.656
FRMD7
Si:ch211-243g6.3.
 
      0.628
phip
Pleckstrin homology domain-interacting protein.
   
  
 0.599
ptpn23b
Protein tyrosine phosphatase, non-receptor type 23, b.
 
  
 
 0.599
rnf130
Ring finger protein 130.
    
 
 0.573
phf6
PHD finger protein 6.
   
  
 0.546
rgs1
Regulator of G protein-signaling 1.
      
 0.542
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.540
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.