Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
arrdc3bArrestin domain-containing 3b. (412 aa)    
Predicted Functional Partners:
ENSDARP00000132973
Si:ch211-207b24.4.
    
 
 0.901
clec19a
C-type lectin domain-containing 19A.
      
 0.772
cremb
cAMP-responsive element modulator b.
      
 0.759
nutf2l
Nuclear transport factor 2,-like.
      
 0.740
slc16a9b
Solute carrier family 16 member 9b.
   
 
 0.714
itcha
E3 ubiquitin-protein ligase.
    
 
 0.682
itchb
E3 ubiquitin-protein ligase.
    
 
 0.682
slc39a3
Solute carrier family 39 member 3.
   
  
 0.668
txn2
Thioredoxin 2.
    
 0.646
ptgdsb.1
Lipocalin-type prostaglandin D synthase-like protein; Belongs to the calycin superfamily. Lipocalin family.
   
 
 0.620
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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