Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
tmem144bTransmembrane protein 144b. (380 aa)    
Predicted Functional Partners:
rtraf
RNA transcription, translation and transport factor protein; RNA-binding protein involved in modulation of mRNA transcription by Polymerase II. Component of the tRNA-splicing ligase complex.
      
 0.695
tmem192
Transmembrane protein 192; Belongs to the TMEM192 family.
      
 0.642
nsg2
Neuronal vesicle-trafficking-associated 2.
      
 0.639
TMEM19
Transmembrane protein 19.
      
 0.637
slc35c1
Solute carrier family 35 member C1.
   
  
 0.607
slc35c2
Solute carrier family 35 member C2.
      
 0.602
slc35b3
Solute carrier family 35 member B3.
      
 0.602
slc30a1a
Solute carrier family 30 (Zinc transporter), member 1.
   
  
 0.446
LOC100002134
Uncharacterized protein.
   
  
 0.446
slc39a1
Zinc transporter ZIP1; Mediates zinc uptake.
   
  
 0.406
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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