STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm4.1RNA-binding protein 4.1. (419 aa)    
Predicted Functional Partners:
rbm11
RNA-binding motif protein 11.
      
 0.898
rbm38
RNA-binding motif protein 38.
  
  
 0.710
rbm28
RNA-binding motif protein 28.
      
 0.690
rbm25b
RNA-binding motif protein 25b.
   
 
 0.654
rbm10
RNA-binding motif protein 10.
   
 
 0.588
nudcd2
NudC domain-containing 2.
   
  
 0.568
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.565
rbm5
RNA-binding motif protein 5.
   
 
 0.546
tcp11l2
T-complex 11, testis-specific-like 2.
      
 0.544
ENSDARP00000140806
Si:ch211-199b20.3.
    
 
 0.544
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.