STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acap1ArfGAP with coiled-coil, ankyrin repeat and PH domains 1. (757 aa)    
Predicted Functional Partners:
lrch4
Leucine-rich repeats and calponin homology (CH) domain-containing 4.
   
  
 0.842
rabgap1l
RAB GTPase-activating protein 1-like.
    
 
 0.741
eme1
Essential meiotic structure-specific endonuclease 1.
      
 0.644
gnb2
Guanine nucleotide-binding protein (G protein), beta polypeptide 2.
      
 0.609
cars2
Cysteinyl-tRNA synthetase 2, mitochondrial.
      
 0.584
slc6a14
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
   
  
 0.583
rab35b
RAB35, member RAS oncogene family b.
    
 
 0.555
mpeg1.2
Novel protein similar to H.sapiens MPEG1, macrophage expressed gene 1 (MPEG1, zgc:110354).
   
  
 0.555
E7EY00_DANRE
Si:dkey-16l2.16.
    
 
 0.555
rab35a
Uncharacterized protein.
    
 
 0.548
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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