STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cab39lCalcium-binding protein 39-like. (334 aa)    
Predicted Functional Partners:
stk11
Serine/threonine kinase 11; Belongs to the protein kinase superfamily.
    
 0.990
strada
STE20-related adaptor alpha.
    
 0.980
wu:fj77h11
Protein kinase domain-containing protein.
    
 0.980
prkaa1
Non-specific serine/threonine protein kinase.
    
 0.970
prkaa2
Non-specific serine/threonine protein kinase.
    
 0.955
cab39l1
Calcium-binding protein 39,-like 1.
     
  0.950
cab39
Calcium-binding protein 39.
     
  0.944
lrsam1
Leucine-rich repeat and sterile alpha motif-containing 1.
    
 
 0.684
ascl1b-2
Achaete-scute homolog 1b.
    
 
 0.684
smim19
Small integral membrane protein 19.
      
 0.662
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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