STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
plagxPleiomorphic adenoma gene X. (380 aa)    
Predicted Functional Partners:
zfand3
Zinc finger, AN1-type domain 3.
      
 0.780
desi2
Deubiquitinase DESI2; Has deubiquitinating activity towards 'Lys-48'- and 'Lys-63'- linked polyubiquitin chains.
      
 0.442
ints13
Integrator complex subunit 13.
   
   0.421
zcchc4
Zinc finger, CCHC domain-containing 4.
   
    0.415
mrpl2
Mitochondrial ribosomal protein L2.
   
   0.411
pfdn6
Prefoldin subunit 6.
   
    0.410
gpn3
GPN-loop GTPase 3; Small GTPase required for proper localization of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.
   
    0.410
cog3
Component of oligomeric golgi complex 3.
   
    0.410
mak
Male germ cell-associated kinase.
   
    0.406
adck2
AarF domain-containing kinase 2.
   
    0.406
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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