STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sh3bgrl2SH3 domain-binding glutamic acid-rich-like protein 2. (105 aa)    
Predicted Functional Partners:
ngrn
Neugrin, neurite outgrowth-associated.
      
 0.749
caly
Calcyon neuron-specific vesicular protein.
      
 0.745
rundc3ab
RUN domain-containing protein 3A.
      
 0.744
mxd4
MAX dimerization protein 4.
   
  
 0.677
LOC100331987
Seizure-related 6 homolog (mouse)-like.
      
 0.664
CDK2AP1
Cyclin dependent kinase 2 associated protein 1.
      
 0.645
nisch
Nischarin.
      
 0.606
LOC101884302
Filamin A-interacting protein 1a.
      
 0.595
cirbpa
Cold-inducible RNA-binding protein a.
      
 0.543
shc1
SHC (Src homology 2 domain-containing)-transforming protein 1.
   
  
 0.495
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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