STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scamp1Secretory carrier-associated membrane protein. (338 aa)    
Predicted Functional Partners:
arl5a
Novel protein similar to vertebrate ADP-ribosylation factor-like 8 (ARL8); Belongs to the small GTPase superfamily. Arf family.
    
 
 0.737
drg2
Developmentally-regulated GTP-binding protein 2.
   
  
 0.736
ttc37
Tetratricopeptide repeat domain 37.
   
  
 0.690
syt7a
Synaptotagmin VIIa.
   
  
 0.678
psip1a
PC4 and SFRS1-interacting protein 1a.
      
 0.669
eapp
E2f-associated phosphoprotein.
      
 0.658
noc3l
Nucleolar complex protein 3 homolog; Belongs to the CBF/MAK21 family.
      
 0.650
rab40c
RAB40c, member RAS oncogene family.
    
 
 0.583
syt7b
Synaptotagmin VIIb.
   
  
 0.579
arfgef3
ARFGEF family member 3.
      
 0.569
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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