STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smoxSpermine oxidase. (539 aa)    
Predicted Functional Partners:
srm
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
     
 0.974
sms
Spermine synthase.
     
 0.967
paox1
Amine oxidase.
  
  
0.914
aoc2
Amine oxidase.
   
 
 0.907
aldh3b1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.905
aldh3b2
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 0.905
amd1
S-adenosylmethionine decarboxylase proenzyme.
      
 0.852
march2
E3 ubiquitin-protein ligase MARCHF2; E3 ubiquitin-protein ligase which may be involved in endosomal trafficking. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.
   
  
 0.740
odc1
Ornithine decarboxylase 1; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
   
  
 0.679
aldh3a2b
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.673
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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