lsm6 protein (Danio rerio) - STRING interaction network

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[Homology]

Score

lsm6

LSM6 homolog, U6 small nuclear RNA and mRNA degradation-associated. (80 aa)

Predicted Functional Partners:

lsm4

0.999

lsm7

0.999

lsm5

0.999

lsm3

0.999

lsm8

0.999

LSM2

0.998

smx5

0.997

snrpd2

0.996

lsm1

0.995

snrpd1

0.991

Your Current Organism:

Danio rerio

NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM2	lsm1	ENSDARP00000156037	ENSDARP00000063391	Si:ch73-14h10.2.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.982
LSM2	lsm3	ENSDARP00000156037	ENSDARP00000104495	Si:ch73-14h10.2.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.997
LSM2	lsm4	ENSDARP00000156037	ENSDARP00000037344	Si:ch73-14h10.2.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.995
LSM2	lsm5	ENSDARP00000156037	ENSDARP00000096681	Si:ch73-14h10.2.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.997
LSM2	lsm6	ENSDARP00000156037	ENSDARP00000053772	Si:ch73-14h10.2.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation-associated.	0.998
LSM2	lsm7	ENSDARP00000156037	ENSDARP00000075631	Si:ch73-14h10.2.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation-associated.	0.998
LSM2	lsm8	ENSDARP00000156037	ENSDARP00000104545	Si:ch73-14h10.2.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM2	snrpd1	ENSDARP00000156037	ENSDARP00000027770	Si:ch73-14h10.2.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.917
LSM2	snrpd2	ENSDARP00000156037	ENSDARP00000059193	Si:ch73-14h10.2.	Small nuclear ribonucleoprotein Sm D2.	0.992
lsm1	LSM2	ENSDARP00000063391	ENSDARP00000156037	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Si:ch73-14h10.2.	0.982
lsm1	lsm3	ENSDARP00000063391	ENSDARP00000104495	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
lsm1	lsm4	ENSDARP00000063391	ENSDARP00000037344	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
lsm1	lsm5	ENSDARP00000063391	ENSDARP00000096681	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
lsm1	lsm6	ENSDARP00000063391	ENSDARP00000053772	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation-associated.	0.995
lsm1	lsm7	ENSDARP00000063391	ENSDARP00000075631	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation-associated.	0.999
lsm1	lsm8	ENSDARP00000063391	ENSDARP00000104545	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.971
lsm1	smx5	ENSDARP00000063391	ENSDARP00000132667	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.996
lsm1	snrpd1	ENSDARP00000063391	ENSDARP00000027770	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.749
lsm1	snrpd2	ENSDARP00000063391	ENSDARP00000059193	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Small nuclear ribonucleoprotein Sm D2.	0.943
lsm3	LSM2	ENSDARP00000104495	ENSDARP00000156037	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Si:ch73-14h10.2.	0.997

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