STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arf3bNovel protein similar to human ADP-ribosylation factor 1 (ARF1); Belongs to the small GTPase superfamily. Arf family. (181 aa)    
Predicted Functional Partners:
pi4kb
Phosphatidylinositol 4-kinase beta; Phosphorylates phosphatidylinositol (PI) in the first committed step in the production of the second messenger inositol- 1,4,5,-trisphosphate (PIP).
    
 0.832
arf1
ADP-ribosylation factor 1; Belongs to the small GTPase superfamily. Arf family.
  
  
0.706
mrpl45
Mitochondrial ribosomal protein L45.
   
  
 0.701
gga3a
Golgi-associated, gamma adaptin ear-containing, ARF-binding protein 3a.
    
 
 0.695
nmt1a
Glycylpeptide N-tetradecanoyltransferase; Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins; Belongs to the NMT family.
    
 
 0.656
gga1
Golgi-associated, gamma adaptin ear-containing, ARF-binding protein 1.
    
 
 0.656
copb2
Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
   
 
 0.644
gbf1
Golgi brefeldin A-resistant guanine nucleotide exchange factor 1.
    
 
 0.636
itsn2a
Intersectin 2a.
    
 
 0.617
itsn2b
Intersectin 2b.
    
 
 0.617
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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