STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C14H4orf47UPF0602 protein C4orf47 homolog. (311 aa)    
Predicted Functional Partners:
CI116_DANRE
UPF0691 protein C9orf116 homolog; Belongs to the UPF0691 family.
    
 
 0.968
efcab1
EF-hand calcium-binding domain 1.
    
 
 0.936
enkur
Enkurin, TRPC channel-interacting protein.
   
 
 0.929
iqub
IQ motif and ubiquitin domain-containing.
   
 
 0.909
C19H5orf49
Si:dkeyp-46h3.1.
   
 
 0.907
efhb
EF-hand domain family, member B.
   
   0.895
ccdc96
Similar to coiled-coil domain containing 96.
    
 
 0.892
ccdc173
Coiled-coil domain-containing 173.
   
   0.891
tekt2
Tektin 2 (testicular).
   
   0.889
pacrg
PARK2 co-regulated.
   
   0.883
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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