Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
oprd1bOpioid receptor, delta 1b; Belongs to the G-protein coupled receptor 1 family. (375 aa)    
Predicted Functional Partners:
penkb
Proenkephalin b.
    
 0.946
pomca
Pro-opiomelanocortin protein.
   
 0.932
penka
Proenkephalin a.
    
 0.929
pnoca
Prepronociceptin a.
     
 0.894
pnocb
Prepronociceptin b.
     
  0.830
pdyn
Prodynorphin.
   
 0.830
gnb2
Guanine nucleotide-binding protein (G protein), beta polypeptide 2.
    
 0.823
gnb4b
Guanine nucleotide-binding protein (G protein), beta polypeptide 4b.
    
 0.823
gnb3a
Novel protein similar to guanine nucleotide binding protein (G protein) beta polypeptide family.
    
  0.790
gnai3
Guanine nucleotide-binding protein (G protein), alpha-inhibiting activity polypeptide 3.
    
  0.783
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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