Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
pvalb5Parvalbumin isoform 2a; Belongs to the parvalbumin family. (108 aa)    
Predicted Functional Partners:
ompb
Olfactory marker protein b.
   
  
 0.675
psmb11a
Novel protein similar to proteasomes.
   
 
 0.603
fybb
FYN-binding protein b.
      
 0.570
trpc2a
Transient receptor potential cation channel subfamily C member 2a.
      
 0.569
mep1a.2
Meprin A subunit.
      
 0.563
wdr90
WD repeat domain 90.
    
 
 0.539
lhx2a
LIM homeobox 2a.
    
 
 0.532
npffl
Neuropeptide FF-amide peptide precursor-like.
   
  
 0.524
prr15la
Proline-rich protein 15-like protein A; Belongs to the PRR15 family.
   
  
 0.508
ak9
Adenylate kinase 9.
    
 0.505
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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