Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
alkbh7AlkB homolog 7. (233 aa)    
Predicted Functional Partners:
alkbh6
Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6; Probable dioxygenase that requires molecular oxygen, alpha- ketoglutarate and iron.
   
  
 0.912
alkbh8
AlkB homolog 8, tRNA methyltransferase.
      
 0.841
alkbh1
AlkB homolog 1, histone H2A dioxygenase.
      
 0.829
alkbh4
AlkB homolog 4, lysine demthylase.
   
  
0.803
alkbh2
AlkB homolog 2, alpha-ketoglutarate-dependent dioxygenase.
   
  
 0.766
samd10b
Sterile alpha motif domain-containing 10b.
      
 0.700
H0WED3_DANRE
Si:ch211-197k17.3.
      
 0.695
pms1
PMS1 homolog 1, mismatch repair system component.
      
 0.693
nckipsd
NCK-interacting protein with SH3 domain.
      
 0.692
trmt61b
tRNA methyltransferase 61B.
      
 0.663
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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