Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
itga3aIntegrin, alpha 3a; Belongs to the integrin alpha chain family. (1053 aa)    
Predicted Functional Partners:
itgb4
Integrin beta.
   
 0.975
itga3b
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
  
  
0.967
Reln
Reelin domain-containing protein.
    
 0.953
fn1a
Fibronectin 1a.
    
 0.949
itgb1a
Integrin beta; Belongs to the integrin beta chain family.
   
 0.944
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.939
lama5
Laminin, alpha 5.
   
 0.933
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.931
actn4
Actinin, alpha 4.
   
 
 0.923
vtnb
Vitronectin b.
   
 0.921
Your Current Organism:
Danio rerio
NCBI taxonomy Id: 7955
Other names: Brachydanio rerio, Brachydanio rerio frankei, Cyprinus rerio, D. rerio, Danio frankei, Danio rerio frankei, leopard danio, zebra danio, zebra fish, zebrafish
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